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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10015319_10017205_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10015319 - 10017205
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
ACATGCCCGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GCTCTCTCAACA
Flanking Amino Acid:
LHTDHELTLKVTVHSWSSLE
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
53.4
0.08
1
47.3
36
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
58.4
0.26
1.6
65.67
40.5

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921