About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10026570_10028887_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10026570 - 10028887
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTCTGATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAA
U12 Branch Point Sequence:
TCTTCTCTGATC
Flanking Amino Acid:
VKNIREIVLAEDKSRPFVAS
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
70.1
0.5
1
67.3
39.3
Major PPT
74.3
0.55
0.9
65.6
39.8
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
58.7
0.25
1.6
69.8
36.3

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921