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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10029056_10029624_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10029056 - 10029624
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
AATTGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTGCTTAACC
Flanking Amino Acid:
ESVRAEVSHQVRRLKSHPSI
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
66.1
0.4
1
73
31.5
Major PPT
75.5
0.57
1
71.1
43.3
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
81
0.95
1.7
90.55
30.7

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921