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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10029712_10032555_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10029712 - 10032555
Intron Length:
2844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAACAA
5'SS Class:
major
3'SS Sequence:
CTATTTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
YDICDELGIMIWQDFMFACA
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
62.9
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
0.8
72.6
32
Minor 5ss
30.8
-2.2
3.1
35.6
42.2
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921