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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10032674_10033170_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10032674 - 10033170
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
TTGTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACTTATTTAAAT
Flanking Amino Acid:
DSFQDRVTYDKLWLLLKSAA
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
66
40.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
39.9
-1.1
3.1
51.2
39.7
Minor BPS
62.7
0.48
1.6
76.56
39.8

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921