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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10033323_10038666_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10033323 - 10038666
Intron Length:
5344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CATGTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTGCTTTAAAC
Flanking Amino Acid:
AGYKIEKISKAYFRTVELVQ
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
0.9
68.2
37.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
65.3
0.46
1.5
70.99
40.7

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921