Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10038778_10041654_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10038778 - 10041654

Intron Length:

2877

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTATTTTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TCTTCTTCTATT

Flanking Amino Acid:

SIVLLVNINKSSTVEAWWPN

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

76.4

0.59

75.1

38.6

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

55.4

0.25

1.9

75.66

41.6

Associated Gene:

Gene:

MANBA

Ensembl Gene ID:

ENSAPLG00000014676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015353

10011067 - 10055987

44921