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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10047182_10049115_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10047182 - 10049115
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTGACCT
Flanking Amino Acid:
GTTDNMFNRYSFDITSVIKE
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72
0.49
0.9
66.1
39.9
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
68.1
0.65
1.7
88.65
36.4

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921