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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10049222_10049722_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10049222 - 10049722
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTATGTGTATTT
Flanking Amino Acid:
SRTFKTPFDVRKWQRINLVF
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.6
0.78
0.7
81.1
30.9
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
41.3
-0.5
2.4
60.72
43.7

Associated Gene:

Gene:
MANBA
Ensembl Gene ID:
ENSAPLG00000014676
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015353
10011067 - 10055987
44921