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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10070661_10072298_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10070661 - 10072298
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTAACTCAATT
Flanking Amino Acid:
IARIYKTDRDKYNRISREWT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
84.7
30.1
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
51.1
0.11
1.8
68.65
42.1

Associated Gene:

Gene:
UBE2D3
Ensembl Gene ID:
ENSAPLG00000018631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040184
10070615 - 10082116
11502