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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10072393_10073773_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10072393 - 10073773
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QWSPALTISKVLLSICSLLC
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
UBE2D3
Ensembl Gene ID:
ENSAPLG00000018631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040184
10070615 - 10082116
11502