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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10073880_10074714_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10073880 - 10074714
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
GTGTTCTTAGTA
Flanking Amino Acid:
PTDYPFKPPKVAFTTRIYHP
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
60.9
0.34
1.6
67.45
39.5

Associated Gene:

Gene:
UBE2D3
Ensembl Gene ID:
ENSAPLG00000018631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040184
10070615 - 10082116
11502