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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10108866_10109832_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10108866 - 10109832
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTGTACTAATTT
Flanking Amino Acid:
AYCRCWRSKTFPVCDGSHNK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
70.4
36.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
37.5
-1.4
3.3
50.6
46.1
Minor BPS
46.5
-0.1
2
65.35
45.4

Associated Gene:

Gene:
CISD2
Ensembl Gene ID:
ENSAPLG00000000597
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000615
10108019 - 10109922
1904