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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10117985_10120308_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10117985 - 10120308
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTGATGAATT
Flanking Amino Acid:
VAGVGWSDEKREVEKIVAVA
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
100
1.24
0.5
100
0
Major PPT
84.1
0.77
0.8
78.2
34.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
49.6
0.05
2.1
75.06
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000868
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000963
10113711 - 10127452
13742