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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10120459_10120952_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10120459 - 10120952
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTACTTGCA
5'SS Class:
weak_major
3'SS Sequence:
TCCTTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTTCCTTGATT
Flanking Amino Acid:
LKVTFPSSGGTSLSWKRSYL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.1
52.7
38.7
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
79
0.65
0.9
73
36
Minor 5ss
33.2
-1.9
3.3
37.3
41.2
Minor BPS
89.6
1.33
0.7
99.24
21.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000868
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000963
10113711 - 10127452
13742