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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10121083_10121159_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10121083 - 10121159
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTAC
5'SS Class:
major
3'SS Sequence:
CAAATGCAGTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGATCCAAATG
Flanking Amino Acid:
HLPWQWGFILGSLPSRRLNL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.9
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
48.6
-0
1.1
44.1
42.1
Minor 5ss
36.7
-1.5
3.2
41.6
45.3
Minor BPS
42.7
-0.6
1.9
46.43
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000868
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000963
10113711 - 10127452
13742