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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10121288_10123227_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10121288 - 10123227
Intron Length:
1940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTGCTTTTATA
Flanking Amino Acid:
TRAGLGLDPKALKKLKAVCL
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83
0.74
0.8
78.6
34.2
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
62
0.37
1.7
74.49
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000868
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000963
10113711 - 10127452
13742