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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10135173_10136370_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10135173 - 10136370
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATGTAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTATGTAATT
Flanking Amino Acid:
HLFVYLASDESAYMTGNELI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
80
0.75
1
78.6
31
Major PPT
75.7
0.58
1
71.5
42.8
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
58.9
0.36
2.1
84.41
36.8

Associated Gene:

Gene:
BDH2
Ensembl Gene ID:
ENSAPLG00000001905
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002072
10135119 - 10145959
10841