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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10137195_10137906_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10137195 - 10137906
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGAGCTTTAATA
Flanking Amino Acid:
QGIRCNCVCPGTVDTPSLQE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.3
0.68
0.9
77.2
37.1
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
65.7
0.49
1.4
68.59
38.2

Associated Gene:

Gene:
BDH2
Ensembl Gene ID:
ENSAPLG00000001905
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002072
10135119 - 10145959
10841