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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10139424_10141124_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10139424 - 10141124
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCCTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
ATTTTTTTTACA
Flanking Amino Acid:
YLMIKTFLPMMLKQKSGNII
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.1
43.8
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
92.8
0.96
0.7
88.1
28.6
Minor 5ss
50.2
0.01
2.8
70.5
41.1
Minor BPS
66.6
0.51
1.5
76.69
33.7

Associated Gene:

Gene:
BDH2
Ensembl Gene ID:
ENSAPLG00000001905
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002072
10135119 - 10145959
10841