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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10141234_10141724_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10141234 - 10141724
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACCAAC
5'SS Class:
major
3'SS Sequence:
CCACTTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTGCTTCATCC
Flanking Amino Acid:
GRIDVLCNIAGFVHHGTVLE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
63.2
43.4
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
74.5
0.55
0.9
65.5
39.6
Minor 5ss
44.8
-0.6
2.7
52.3
44.8
Minor BPS
48.7
-0.1
1.9
61.83
44.1

Associated Gene:

Gene:
BDH2
Ensembl Gene ID:
ENSAPLG00000001905
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002072
10135119 - 10145959
10841