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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10141822_10144988_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10141822 - 10144988
Intron Length:
3167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGAAACTAAAAC
Flanking Amino Acid:
TKLRELEKYPGIQIRVLDVT
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
81.6
0.71
0.9
72.9
41.9
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
45.8
-0.3
1.9
55.66
41.5

Associated Gene:

Gene:
BDH2
Ensembl Gene ID:
ENSAPLG00000001905
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002072
10135119 - 10145959
10841