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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10145068_10145887_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10145068 - 10145887
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
CTGTATTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAAATATAAACT
Flanking Amino Acid:
AQGIGRATAIAFAKEGAKVI
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
62.4
44.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.6
0.58
0.9
73.2
36.9
Minor 5ss
41.1
-1
2.8
49.9
41
Minor BPS
48.3
-0
1.9
67.91
42.2

Associated Gene:

Gene:
BDH2
Ensembl Gene ID:
ENSAPLG00000001905
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002072
10135119 - 10145959
10841