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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10280915_10385630_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10280915 - 10385630
Intron Length:
104716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTGTTTACAG
Flanking Amino Acid:
STQTELVGHDGTAFGSAPVP
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
49.1
-0.2
2.2
63.96
44.2

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027434
10165159 - 10726917
561759