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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10351733_10385630_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10351733 - 10385630
Intron Length:
33898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
AAGTATGTAAGA
Flanking Amino Acid:
STQTELVGHDHQTLCAS*
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
42
-0.6
2.2
51.34
40.5

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009731
10351709 - 10726873
375165