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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10385709_10435099_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10385709 - 10435099
Intron Length:
49391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTTTGTTTTACA
Flanking Amino Acid:
ELIAQLREELEKAQCLQKAF
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
88.8
0.87
0.7
83.2
31.9
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
54.3
0.13
2.1
70.62
41.9

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027434
10165159 - 10726917
561759
ENSAPLT00000009731
10351709 - 10726873
375165
ENSAPLT00000009726
10379530 - 10816444
436915
ENSAPLT00000045422
10384275 - 10726917
342643