About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10483420_10534968_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10483420 - 10534968
Intron Length:
51549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCACC
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTACTGCAAAT
Flanking Amino Acid:
LLKMKRVLQESTDMSPASST
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.7
38.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
40.7
-1
2.8
53.4
43.4
Minor BPS
44.6
-0.3
2.2
65.94
44.6

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027434
10165159 - 10726917
561759
ENSAPLT00000044497
10415069 - 10726917
311849
ENSAPLT00000009731
10351709 - 10726873
375165
ENSAPLT00000040008
10406391 - 10726917
320527
ENSAPLT00000009726
10379530 - 10816444
436915
ENSAPLT00000039380
10434599 - 10778775
344177
ENSAPLT00000029480
10432223 - 10726917
294695
ENSAPLT00000045422
10384275 - 10726917
342643