About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10535180_10620707_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10535180 - 10620707
Intron Length:
85528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCTCTTGTAAG
Flanking Amino Acid:
ERTIMPDVSKQNLSLKLSKE
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.2
32.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
72.3
0.5
1.1
79.3
33
Minor 5ss
38.6
-1.3
3
54.7
43.6
Minor BPS
47.1
-0.3
2
57.05
44.5

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027434
10165159 - 10726917
561759
ENSAPLT00000042103
10434599 - 10726917
292319
ENSAPLT00000009731
10351709 - 10726873
375165
ENSAPLT00000040008
10406391 - 10726917
320527
ENSAPLT00000045422
10384275 - 10726917
342643
ENSAPLT00000009726
10379530 - 10816444
436915
ENSAPLT00000039380
10434599 - 10778775
344177
ENSAPLT00000029480
10432223 - 10726917
294695
ENSAPLT00000044497
10415069 - 10726917
311849