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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10620829_10669184_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10620829 - 10669184
Intron Length:
48356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TTTATCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAATTTTTATCT
Flanking Amino Acid:
FVEEQHHHRSVCREDSYQSI
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.9
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
31.8
-2.1
3.1
40.3
45.3
Minor BPS
59.2
0.37
1.5
71.92
39

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027434
10165159 - 10726917
561759
ENSAPLT00000042103
10434599 - 10726917
292319
ENSAPLT00000009731
10351709 - 10726873
375165
ENSAPLT00000040008
10406391 - 10726917
320527
ENSAPLT00000009726
10379530 - 10816444
436915
ENSAPLT00000039380
10434599 - 10778775
344177
ENSAPLT00000045422
10384275 - 10726917
342643
ENSAPLT00000029480
10432223 - 10726917
294695
ENSAPLT00000044497
10415069 - 10726917
311849