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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10722943_10725552_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10722943 - 10725552
Intron Length:
2610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTCTCTGTAATG
Flanking Amino Acid:
QLGYETNHPKVDLANSFSPY
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
79.1
0.65
0.8
74
35.6
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
57.1
0.08
2.1
66.31
42.6

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027434
10165159 - 10726917
561759
ENSAPLT00000042103
10434599 - 10726917
292319
ENSAPLT00000009731
10351709 - 10726873
375165
ENSAPLT00000040008
10406391 - 10726917
320527
ENSAPLT00000045422
10384275 - 10726917
342643
ENSAPLT00000009726
10379530 - 10816444
436915
ENSAPLT00000039380
10434599 - 10778775
344177
ENSAPLT00000029480
10432223 - 10726917
294695
ENSAPLT00000044497
10415069 - 10726917
311849