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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10726918_10816167_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10726918 - 10816167
Intron Length:
89250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.5
0.55
0.9
67.2
38.2
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
77.6
0.85
1.4
86.43
30.8

Associated Gene:

Gene:
CCSER1
Ensembl Gene ID:
ENSAPLG00000009352
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009726
10379530 - 10816444
436915