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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_108240_157170_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108240 - 157170
Intron Length:
48931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATCTTGATCT
Flanking Amino Acid:
LTHLGELQLLHTYWEQIDKK
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.4
0.77
0.7
76.2
32.3
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
56.4
0.28
1.7
73.48
43.4

Associated Gene:

Gene:
FAM241A
Ensembl Gene ID:
ENSAPLG00000014046
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014623
108184 - 375704
267521