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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10858183_10865347_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10858183 - 10865347
Intron Length:
7165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
CTCTCTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
CTCTCTATCACA
Flanking Amino Acid:
QRNTDNTIDSGQYSACVSSP
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
77.7
0.62
0.8
72.1
31
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
48.8
-0.1
2
63.36
43.5

Associated Gene:

Gene:
MMRN1
Ensembl Gene ID:
ENSAPLG00000009378
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009765
10856461 - 10898193
41733