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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10867328_10872339_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10867328 - 10872339
Intron Length:
5012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCCCAAAG
Flanking Amino Acid:
KGRDLQSFLKGLKSKSINML
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.5
0.53
1
74.9
27.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.5
-0.1
2
65.66
41.7

Associated Gene:

Gene:
MMRN1
Ensembl Gene ID:
ENSAPLG00000009378
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009765
10856461 - 10898193
41733