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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10883337_10896618_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10883337 - 10896618
Intron Length:
13282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTACTTTAATT
Flanking Amino Acid:
KTSGSQTTRGKNWCAYVHTR
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
92.1
0.95
0.6
87.5
22.9
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
76
0.89
1.2
85.44
34.7

Associated Gene:

Gene:
MMRN1
Ensembl Gene ID:
ENSAPLG00000009378
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009765
10856461 - 10898193
41733