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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10931233_10939545_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10931233 - 10939545
Intron Length:
8313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
AGAGGTGTAATG
Flanking Amino Acid:
KEGVVHGVTTVAEKTKEQVS
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
78.9
0.65
0.8
76.8
31.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
38.1
-1
2.2
38.39
39.3

Associated Gene:

Gene:
SNCA
Ensembl Gene ID:
ENSAPLG00000009456
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039126
10924533 - 10992141
67609
ENSAPLT00000037221
10923694 - 10993529
69836
ENSAPLT00000009869
10924533 - 10992746
68214