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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10939692_10991847_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10939692 - 10991847
Intron Length:
52156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTG
5'SS Class:
major
3'SS Sequence:
GTTTTAAATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGTTTTAAAT
Flanking Amino Acid:
LVKKDQLAKQNEEGFLQEGM
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
70.9
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.9
0.45
1
64.6
40.7
Minor 5ss
38.8
-1.3
3
49.5
46.8
Minor BPS
62.7
0.48
1.5
75.95
41.3

Associated Gene:

Gene:
SNCA
Ensembl Gene ID:
ENSAPLG00000009456
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037221
10923694 - 10993529
69836
ENSAPLT00000009869
10924533 - 10992746
68214
ENSAPLT00000044339
10924533 - 10992141
67609
ENSAPLT00000039126
10924533 - 10992141
67609