Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10991938_10992704_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10991938 - 10992704

Intron Length:

767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATCTG

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTTGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

TTATCAGTATGT

Flanking Amino Acid:

ENEAYEMPPEPEGSSPPICG

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

75.1

41.1

Major BPS

79.1

0.72

69.3

38.4

Major PPT

0.65

76.9

42.1

Minor 5ss

37.2

-1.4

3.1

49.5

46.7

Minor BPS

43.1

-0.4

2.6

69.82

46.6

Associated Gene:

Gene:

SNCA

Ensembl Gene ID:

ENSAPLG00000009456

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009869

10924533 - 10992746

68214