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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11038149_11043635_F

Intron Information:

Intron Rank:
123555
Intron Class:
major
Intron Phase:
Intron Coordinates:
11038149 - 11043635
Intron Length:
5487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTCTGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
67.7
0.44
1
58
38.9
Major PPT
77
0.61
0.9
70.5
38.9
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
73.2
0.81
1.7
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016629
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024174
11037660 - 11044595
6936