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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1117766_1157657_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1117766 - 1157657
Intron Length:
39892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CCTGCCTGATGC
Flanking Amino Acid:
TPSRSQFITGKYQIHTGLQH
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
72.8
0.51
0.9
65.5
36.1
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
43.2
-0.5
2
50.27
46.5

Associated Gene:

Gene:
ARSJ
Ensembl Gene ID:
ENSAPLG00000008292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008600
1116364 - 1158043
41680