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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11233136_11244040_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11233136 - 11244040
Intron Length:
10905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTAAATTTAATT
Flanking Amino Acid:
SMACEVMPLQSSQEDERPMS
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
57.2
0.31
1.5
70.31
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009518
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041342
11232782 - 11294284
61503