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Intron Name: Anas_platyrhynchos_platyrhynchos_4_11258216_11261474_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11258216 - 11261474

Intron Length:

3259

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TACTATATTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ACTGCTTTAATG

Flanking Amino Acid:

ELNDNQDSPVSMESFSSSRP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

65.8

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

76.6

0.6

0.9

69.5

39.9

Minor 5ss

44.3

-0.6

2.9

43.7

Minor BPS

62.4

0.25

1.5

60.82

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009518

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031842

11182876 - 11292446

109571

ENSAPLT00000009952

11182910 - 11291446

108537

ENSAPLT00000041342

11232782 - 11294284

61503

ENSAPLT00000040402

11254934 - 11264227

9294

ENSAPLT00000035393

11182876 - 11291446

108571