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Intron Name: Anas_platyrhynchos_platyrhynchos_4_11262310_11267478_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11262310 - 11267478

Intron Length:

5169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTAAT

5'SS Class:

major

3'SS Sequence:

TTGGGGAATATAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GAAACAT

U12 Branch Point Sequence:

GTTTGGGGAATA

Flanking Amino Acid:

SGEVIFRHSQQTSNMKIQEH

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.2

79.1

36.4

Major BPS

48.2

-0.1

1.2

55.4

40.4

Major PPT

55.5

0.12

1.1

47.7

44.1

Minor 5ss

32.4

-2

2.9

42.3

44.5

Minor BPS

37.9

-0.9

2.7

56.43

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009518

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041342

11232782 - 11294284

61503

ENSAPLT00000035393

11182876 - 11291446

108571

ENSAPLT00000031842

11182876 - 11292446

109571

ENSAPLT00000009952

11182910 - 11291446

108537