About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11275987_11277048_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11275987 - 11277048
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TTCAACATGACT
Flanking Amino Acid:
EKFEEERKYRPSHSDKAANP
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
66
40.1
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
34.6
-1.8
3
41.2
39.1
Minor BPS
50.8
0.1
1.9
74.38
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009518
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035393
11182876 - 11291446
108571
ENSAPLT00000031842
11182876 - 11292446
109571
ENSAPLT00000009952
11182910 - 11291446
108537
ENSAPLT00000041342
11232782 - 11294284
61503