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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11277493_11278882_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11277493 - 11278882
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
ACACTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCTCTCTGACA
Flanking Amino Acid:
AETNRPEDIKDMTRDQIAAE
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
70
0.45
0.9
64.7
35.6
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
56.2
0.19
1.7
66.6
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009518
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031842
11182876 - 11292446
109571
ENSAPLT00000009952
11182910 - 11291446
108537
ENSAPLT00000041342
11232782 - 11294284
61503
ENSAPLT00000035393
11182876 - 11291446
108571