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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11289464_11291319_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11289464 - 11291319
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTCTTTTTACTC
Flanking Amino Acid:
FEDNFFRQNGRNVQKEDRTP
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.7
0.47
0.8
63.1
34.1
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
53.1
0.08
1.6
60.33
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009518
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031842
11182876 - 11292446
109571
ENSAPLT00000009952
11182910 - 11291446
108537
ENSAPLT00000041342
11232782 - 11294284
61503
ENSAPLT00000035393
11182876 - 11291446
108571