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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11298059_11298539_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11298059 - 11298539
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GTTTTTCTAATA
Flanking Amino Acid:
SNYNWEELEESAVYKGDYTA
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
77.5
0.62
0.9
74.3
35.3
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
60.7
0.33
1.6
72.09
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010831
11297016 - 11328029
31014