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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11302090_11302833_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11302090 - 11302833
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GACTCTCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCCATGACT
Flanking Amino Acid:
DLKELSPTEGRSLQQLLDYP
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
64.9
0.34
0.9
59
37
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
72.5
0.79
1.6
88.48
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020217
11301447 - 11328061
26615
ENSAPLT00000010831
11297016 - 11328029
31014