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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11306442_11306528_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11306442 - 11306528
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAGAAG
U12 Branch Point Sequence:
TGGGCACCAGTC
Flanking Amino Acid:
GMKVRPSIMQDAVTLCSYPF
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
40.8
-0.5
1.7
47.4
43
Major PPT
76.5
0.6
1
69.6
41.6
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
34.8
-1.1
2
41.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020217
11301447 - 11328061
26615