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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11306553_11307797_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11306553 - 11307797
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTAAAA
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
LMWFLHQAGMKVRPSIMQDA
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
49.6
-0
1.1
57
36.4
Major PPT
82
0.72
0.8
76.9
31.7
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020217
11301447 - 11328061
26615